Metagenomic sequencing of peat: 0-20 cm - SRA

SRX17677947: Metagenomic sequencing of peat: 0-20 cm
1 ILLUMINA (Illumina HiSeq 2500) run: 7.5M spots, 3.8G bases, 1.8Gb downloads

Design: Genomic DNA was extracted from peat samples using the Zymo Research Soil MidiPrep kit (Zymo Research, CA, USA). Shotgun DNA libraries were prepared using the TruSeq DNA library preparation kit (Illumina, San Diego, CA, USA) with 2x 250 bp chemistry.

Submitted by: National University of Singapore

Study: Tropical peat metagenomes and metagenome-assembled genomes from an oil palm plantation in Jambi, Indonesia

PRJNA883528 • SRP398786 • All experiments • All runs

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Peat samples proximal to and distant from oil palm trees were collected as part of a time-stamped fertiliser intervention experiment in an oil palm plantation located in Jambi, Indonesia. Peat samples were collected from four oil palm trees across two time-points before (days 1 and 4) and four time-points after (days 6, 7, 10, and 14) fertiliser application.

Sample:

SAMN30966934 • SRS15209877 • All experiments • All runs

Organism: peat metagenome

Library:

Name: 4117

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 7.5M spots, 3.8G bases, 1.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR21679853	7,503,796	3.8G	1.8Gb	2023-01-24

ID:: 24577757

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